I was trying to install TopHat on my Mac Osx machine. The configuration results from ./configure for TopHat are:
-- tophat 1.3.3 Configuration Results --
C compiler: gcc -Wall -Wno-strict-aliasing -arch x86_64 -O3 -DNDEBUG
C++ compiler: g++ -Wall -Wno-strict-aliasing -arch x86_64 -O3 -DNDEBUG -I/Users/vmittal3/usr/local/include
GCC version: gcc (GCC) 4.6.0
Host System type: i686-apple-darwin10.6.0
Install prefix: /Users/vmittal3/usr/local
Install eprefix: ${prefix}
See config.h for further configuration information.
Email <[email protected]> with questions and bug reports.
It works fine till this point but once I do "make", it terminates with the following errors:
make all-recursive
Making all in src
if g++ -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/local/include -Wall -Wno-strict-aliasing -arch x86_64 -O3 -DNDEBUG -I/Users/me_user/usr/local/include -I./SeqAn-1.2 -Wall -Wno-strict-aliasing -arch x86_64 -O3 -DNDEBUG -I/Users/me_user/usr/local/include -MT reads.o -MD -MP -MF ".deps/reads.Tpo" -c -o reads.o reads.cpp; \
then mv -f ".deps/reads.Tpo" ".deps/reads.Po"; else rm -f ".deps/reads.Tpo"; exit 1; fi
g++: error: x86_64: No such file or directory
g++: error: x86_64: No such file or directory
g++: error: unrecognized option '-arch'
g++: error: unrecognized option '-arch'
make[2]: *** [reads.o] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
Any suggestions? Thanks.
-- tophat 1.3.3 Configuration Results --
C compiler: gcc -Wall -Wno-strict-aliasing -arch x86_64 -O3 -DNDEBUG
C++ compiler: g++ -Wall -Wno-strict-aliasing -arch x86_64 -O3 -DNDEBUG -I/Users/vmittal3/usr/local/include
GCC version: gcc (GCC) 4.6.0
Host System type: i686-apple-darwin10.6.0
Install prefix: /Users/vmittal3/usr/local
Install eprefix: ${prefix}
See config.h for further configuration information.
Email <[email protected]> with questions and bug reports.
It works fine till this point but once I do "make", it terminates with the following errors:
make all-recursive
Making all in src
if g++ -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/local/include -Wall -Wno-strict-aliasing -arch x86_64 -O3 -DNDEBUG -I/Users/me_user/usr/local/include -I./SeqAn-1.2 -Wall -Wno-strict-aliasing -arch x86_64 -O3 -DNDEBUG -I/Users/me_user/usr/local/include -MT reads.o -MD -MP -MF ".deps/reads.Tpo" -c -o reads.o reads.cpp; \
then mv -f ".deps/reads.Tpo" ".deps/reads.Po"; else rm -f ".deps/reads.Tpo"; exit 1; fi
g++: error: x86_64: No such file or directory
g++: error: x86_64: No such file or directory
g++: error: unrecognized option '-arch'
g++: error: unrecognized option '-arch'
make[2]: *** [reads.o] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
Any suggestions? Thanks.
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