HI, everyone!
I just want to know each gene's expression level not the transcript isoforms. I have alignment data formated in SAM/BAM and annotation file in gtf/gff/bed. Some genes position have overlap with other genes. So I want to know which software is suitable for my question except for cuffdiff or cufflinks?
Thanks for your time!
I just want to know each gene's expression level not the transcript isoforms. I have alignment data formated in SAM/BAM and annotation file in gtf/gff/bed. Some genes position have overlap with other genes. So I want to know which software is suitable for my question except for cuffdiff or cufflinks?
Thanks for your time!
Comment