Dear Sir,
I am trying to perform global alignment for contigs to several
chromosomes in genome using Mummer.
I am wondering what is the parameter I can use for setting the parameter below
Specifically for "nucmer" script.
Thanks and hope to hear from you again.
I am trying to perform global alignment for contigs to several
chromosomes in genome using Mummer.
I am wondering what is the parameter I can use for setting the parameter below
- Gap Extension Cost (e.g. I want to set it to < 1).
- Gap Opening Cost.
Specifically for "nucmer" script.
Thanks and hope to hear from you again.