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Old 08-28-2016, 11:17 PM   #21
dvanic
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Quote:
Originally Posted by shi View Post
What is the version of featureCounts you use?
Rsubread_1.20.6 or command line version subread-1.5.0-p1-Linux-x86_64
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Old 08-28-2016, 11:23 PM   #22
shi
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Can you update to Subread 1.5.1 and try again?
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Old 11-09-2016, 06:45 AM   #23
hbrugge
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I'm also getting a segmentation error.

I use featureCount on 33k files and only 3 of them return this error. I'm getting no stdout or err on these 3 files, just:
44818 Segmentation fault (core dumped)

The query I use:
featureCounts -s 1 -T 8 -t exon -g gene_id -a Homo_sapiens.GRCh37.75.gtf bamfile.bam

Version: 1.5.1
Platform: Linux-x86_64

Link to one of the problem bam files:
https://www.dropbox.com/s/1bro5ohi4p...GCA-1.bam?dl=0

Any help would be highly appreciated

Last edited by hbrugge; 11-15-2016 at 01:48 AM.
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Old 01-10-2017, 08:38 AM   #24
hbrugge
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It would be really nice if anyone could look into this problem
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