Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Volcano plot with R DCseq Bioinformatics 5 07-14-2017 01:44 AM
Dark plot ??? Marcos Lancia Bioinformatics 9 10-20-2015 11:39 AM
SOLiD QV plot av_d SOLiD 5 07-20-2012 12:22 AM
LD decay plot xujie Bioinformatics 0 06-24-2012 08:26 AM
Anyone seen an intensity plot like this? sequencer_lee Illumina/Solexa 7 07-11-2008 12:57 PM

Thread Tools
Old 08-10-2017, 05:41 AM   #1
Junior Member
Location: Germany

Join Date: Jul 2017
Posts: 6
Default MA plot

Hi there!
I would like to make the following plot from NGS data.

What is depicted on the x-axis?
Say I have the fold change of condition1 vs condition2. The "mean expression" would than be the mean of normalized expression counts from one condition or the other, or the mean of all sample counts used for calculating the fold change?

Many thanks for your responses in advance.

Best wishes
DCseq is offline   Reply With Quote
Old 08-11-2017, 02:53 AM   #2
Devon Ryan
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,479

Usually it's the mean of all samples.
dpryan is offline   Reply With Quote

ma plot, mean expression count, ngs

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 03:38 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO