Hi there,
I am new to sequencing so this is maybe a naive question. I did a chip-seq, and used bowtie to align all the short reads to genome. Then I found bowtie output, instead of "chrXX, coordinates, ....", is the following:
gi|110640213|ref|NC_008253.1| 15978 .....
I tried findpeaks to convert it to bed and wig, however it still has the these accession numbers instead of the chromosomes and coordinates.
Can somebody kindly help me out of this ?
Thanks a lot!
Wei
I am new to sequencing so this is maybe a naive question. I did a chip-seq, and used bowtie to align all the short reads to genome. Then I found bowtie output, instead of "chrXX, coordinates, ....", is the following:
gi|110640213|ref|NC_008253.1| 15978 .....
I tried findpeaks to convert it to bed and wig, however it still has the these accession numbers instead of the chromosomes and coordinates.
Can somebody kindly help me out of this ?
Thanks a lot!
Wei
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