Hi all,
We think that a genome we sequenced recently has a integrated plasmid. We have found plasmid related proteins within the annotation, and related species have one or more of this elements. However, experimental assays show that there aren't extrachromosomal elements so we think it could be integrated.
How can we know if there are an integrated plasmid? There are any bioinformatic procedure to elucidate that or give some clues?
Thank you very much!!!
Inma
We think that a genome we sequenced recently has a integrated plasmid. We have found plasmid related proteins within the annotation, and related species have one or more of this elements. However, experimental assays show that there aren't extrachromosomal elements so we think it could be integrated.
How can we know if there are an integrated plasmid? There are any bioinformatic procedure to elucidate that or give some clues?
Thank you very much!!!
Inma
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