I'm trying to use VariationHunter to detect SVs based on PEM data generated by Illumina tech.
One of the parameters required as input for the program is theedit distance per mapped pair, and I have no clue about the meaning of this param. In the examples of the usage file it appears as an integer value ranging from 0 to 4.
Any idea???
Thanks a lot
One of the parameters required as input for the program is theedit distance per mapped pair, and I have no clue about the meaning of this param. In the examples of the usage file it appears as an integer value ranging from 0 to 4.
Any idea???
Thanks a lot
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