Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Cuffnorm Normalization: Per condition or across all samples ? vramnarine RNA Sequencing 0 05-22-2014 12:41 PM
cuffdiff does not output all the CDS in cds.FPKM.tracking file xiangq Bioinformatics 20 04-26-2012 12:39 PM
TSS plot. Drop of the signal at TSS. neurongs Epigenetics 7 04-19-2012 07:21 AM

Thread Tools
Old 01-19-2015, 04:35 PM   #1
Location: San Francisco

Join Date: Aug 2013
Posts: 23
Default Cuffnorm no cds or tss

I am trying to use cuffnorm after tophat and cuffquant. I am using the gencodevM3 annotation and have filtered it so that it only contains CDS and exon information. However, when I run cuffnorm on my samples it only writes information to the genes and isoform tables and leaves the CDS and tss tables empty. Does anyone have any ideas? Thanks
jake13 is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 10:56 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2022, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO