Hello all,
I want to use NCBI command line utilities (esearch, efetch, etc) to achieve the following: given the GSE ID, I want a simple tab-separated output, giving you GSM experiment in column 1, and SRR file name in column 2. Ideally, it would also be collapsed by GSM ID (in cases when you have more than 1 sra file per GSM).
I'm reading through numerous pages of manuals that are relatively obscure for people without much experience with databases, so if you can help me to figure this out, I'd be most grateful
Thank you in advance!
I want to use NCBI command line utilities (esearch, efetch, etc) to achieve the following: given the GSE ID, I want a simple tab-separated output, giving you GSM experiment in column 1, and SRR file name in column 2. Ideally, it would also be collapsed by GSM ID (in cases when you have more than 1 sra file per GSM).
I'm reading through numerous pages of manuals that are relatively obscure for people without much experience with databases, so if you can help me to figure this out, I'd be most grateful
Thank you in advance!
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