SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Avadis NGS vs CLC Genomics? Novice Bioinformatics 34 08-22-2016 11:15 PM
CDS annotation in CLC genomics? evolgen Bioinformatics 1 01-11-2015 07:19 PM
CLC Genomics Workbench ECO Bioinformatics 65 03-27-2012 04:05 AM
PhD position in machine learning and oncoviral genomics at CBS, Denmark tsp Academic/Non-Profit Jobs 0 12-10-2011 12:53 AM
CLC bio Genomics and miRNA nomenclature HTFRIEDELFF Bioinformatics 1 07-05-2011 04:00 AM

Reply
 
Thread Tools
Old 06-21-2012, 12:42 PM   #1
The_Roads
Member
 
Location: USA

Join Date: May 2009
Posts: 37
Default CLC Genomics Machine -- anyone willing to share experiences

Hi,

Are there any CLC Genomics Machine users will to share there experiences?

Everyone loves benchmarks but i guess i am more interested in how does the system work in shared environment with multiple users?

is it easy for local IT to manage/upgrade?

also has anyone installed CLC server on a similar spec third party machine?

cheers,
The_Roads
The_Roads is offline   Reply With Quote
Old 06-22-2012, 06:08 AM   #2
GenoMax
Senior Member
 
Location: East Coast USA

Join Date: Feb 2008
Posts: 7,077
Default

We do use CLC science server on standard hardware (Dell). It is fairly simple to install/upgrade (tech support is there if you need help) for a regular sys admin. Though we have not done it as yet I believe LDAP auth has been integrated in the latest version.

You will want to closely check the licensing model though and make sure it works for you. Smallest science server config gets you one "head" node and one worker node (you would need 2 servers/blades). Only a single job runs on a worker node at any given time (so any additional jobs would pend). CLCBio obviously wants you to invest in additional worker node licenses (and you could if your budget allows for it) if you are anticipating a large number of users/jobs.

You also need a fully licensed desktop client (CLC Genomics Workbench) to submit jobs/retrieve results. There is no workbench light/viewer to facilitate job management.
GenoMax is offline   Reply With Quote
Old 06-24-2012, 11:41 PM   #3
mcvf
Junior Member
 
Location: Aarhus

Join Date: Jun 2012
Posts: 2
Default

Hi,

CLC Genomics Server is a software solution. The CLC Genomics machine is a turn-key solution using standard hardware and software (OS etc). The Genomics Server software runs on almost any x86 architecture running Linux, Windows or Mac OS X.

LDAP has been part of the Server system, since it was launched. If you do not have LDAP or Microsoft Active Directory, you can also use a built in user/group directory.

Data is stored centrally. Either in a file system storage or a relational database. For more information you can visit: http://www.clcbio.com/index.php?id=1617

Btw., there is a web-interface for process management (and other administration features), where you can monitor and stop/restart jobs.

Best Regards,

Mikael Flensborg
Director, Global Partner Relations - CLC bio

Last edited by mcvf; 07-05-2012 at 04:43 AM.
mcvf is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 02:34 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO