Hi all,
Two small questions about myrna:
1) I didn't understand how the per gene p-values and q-values are calculated. The p-valuse represent the significance of a gene having a certain gene expression level by the amount of reads mapped to it? By the score of the alignment?
2) I'm trying to run myrna with bowtie-args "--sam" to get a SAM file of the alignment, and get this error (it works just fine with the same parameters without the flag "bowtie-args").
Any ides why this happens?
* sh: line 1: 18915 Segmentation fault /home/sbsuser/bin/bowtie-0.12.7/bowtie --partition 1000000 --mm -t --hadoopout --st
artverbose --sam --12 .tmp.Align.pl.18662.LOG-sub1-lane8 /data/BKU/Runs/2.7-Dec-10/Lif****z/myrna_dir/jar/index/tomato 2> .tmp.
Align.pl.18662.LOG-sub1-lane8.err
* cp * /tmp/error/Align.pl.18662/
* cp: cannot stat `*': No such file or directory
* cp .* /tmp/error/Align.pl.18662/
* cp: omitting directory `.'
* cp: omitting directory `..'
* /home/sbsuser/bin/bowtie-0.12.7/bowtie exited with non-zero exitlevel 35584; see /tmp/error/Align.pl.18662 on Pipeline
Thanks,
Rachelly.
Two small questions about myrna:
1) I didn't understand how the per gene p-values and q-values are calculated. The p-valuse represent the significance of a gene having a certain gene expression level by the amount of reads mapped to it? By the score of the alignment?
2) I'm trying to run myrna with bowtie-args "--sam" to get a SAM file of the alignment, and get this error (it works just fine with the same parameters without the flag "bowtie-args").
Any ides why this happens?
* sh: line 1: 18915 Segmentation fault /home/sbsuser/bin/bowtie-0.12.7/bowtie --partition 1000000 --mm -t --hadoopout --st
artverbose --sam --12 .tmp.Align.pl.18662.LOG-sub1-lane8 /data/BKU/Runs/2.7-Dec-10/Lif****z/myrna_dir/jar/index/tomato 2> .tmp.
Align.pl.18662.LOG-sub1-lane8.err
* cp * /tmp/error/Align.pl.18662/
* cp: cannot stat `*': No such file or directory
* cp .* /tmp/error/Align.pl.18662/
* cp: omitting directory `.'
* cp: omitting directory `..'
* /home/sbsuser/bin/bowtie-0.12.7/bowtie exited with non-zero exitlevel 35584; see /tmp/error/Align.pl.18662 on Pipeline
Thanks,
Rachelly.
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