Hi,
I generated a multiple alignment of 3 bacterial genomes with MUGSY. I am interested in identifying which nucleotide positions in the 3 genomes align with each other. For example, if I am interested in variation at position 30 in reference genome 1, I am interested in what position in reference genomes 2 and 3 this corresponds with. Is there a way to query .maf files like this?
Thank you!
I generated a multiple alignment of 3 bacterial genomes with MUGSY. I am interested in identifying which nucleotide positions in the 3 genomes align with each other. For example, if I am interested in variation at position 30 in reference genome 1, I am interested in what position in reference genomes 2 and 3 this corresponds with. Is there a way to query .maf files like this?
Thank you!
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