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Old 05-21-2011, 11:40 AM   #1
CS Student
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Default Warning message- BFAST

Dear all,

I am getting the below warning message when trying to run the BFAST program. I would appreciate any help explaining for me the reason for getting this message?

Thanks.
=====================

Reading in reference genome from phi.x.174.fa.nt.brg.
In total read 1 contigs for a total of 5386 bases
************************************************************
Creating the index...
************************************************************
Warning: startContig was less than zero.
Defaulting to contig=1 and position=1.
************************************************************
************************************************************
Warning: endContig was greater than the number of contigs in the reference genome.
Defaulting to reference genome's end contig=1 and position=5386.
************************************************************
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Old 05-23-2011, 07:17 AM   #2
nilshomer
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The default is to auto-detect the range you wish to index etc. You can safely ignore these warnings if you were not trying to manually set the region of interest.
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Old 05-26-2011, 10:56 AM   #3
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Thanks for your reply.
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