SEQanswers

Go Back   SEQanswers > Applications Forums > RNA Sequencing



Similar Threads
Thread Thread Starter Forum Replies Last Post
CummeRbund error steindorff Bioinformatics 6 07-30-2013 05:37 AM
CummeRbund error NRiddiford RNA Sequencing 5 07-26-2013 11:18 AM
cummeRbund error emolinari Bioinformatics 0 06-15-2013 10:41 AM
CummeRbund error newbietonextgen Bioinformatics 1 06-15-2012 11:24 AM
CummeRbund Volcanoplot error Him26 Bioinformatics 1 04-20-2012 10:50 AM

Reply
 
Thread Tools
Old 08-31-2014, 05:54 PM   #1
beeman
Member
 
Location: Australia

Join Date: May 2012
Posts: 20
Default Help with CummeRbund error.. I'm lost

Hi,

I am trying to use cummeRbund to process cuffdiff output, but I'm getting an error message that I'm not sure how to solve.
-------------------
Slots:
annotation
fpkm
repFpkm
diff
count
isoforms CuffFeatureSet instance of size 132
TSS CuffFeatureSet instance of size 72
CDS CuffFeatureSet instance of size 49
promoters CuffFeatureSet instance of size 38
splicing CuffFeatureSet instance of size 72
relCDS CuffFeatureSet instance of size 38
character(0)
[1] 0
No gene set returned (Gene might not be in database?)
Error in validObject(.Object) : invalid class CuffGene
Calls: getGene ... callNextMethod -> eval -> eval -> .nextMethod -> validObject
Execution halted

---------------------

Has anyone run into this problem before and can suggest a fix or at least where the problem may lie?? :/

Thanks
beeman is offline   Reply With Quote
Reply

Tags
cummerbund, rscript

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 02:09 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO