Hello everyone,
I have 2 phenotypes (knockdown vs. control) and 3 replicates for each of them. All mapped and cuffdiff-ed. I want to get a plot between my replicates from same phenotypes with FPKM values on the x and y axis (in log10). Actually here is an example:
Can you suggest me a program for this purpose? I know you are going to say "R" but I am not very familiar with it.
Thanks!
I have 2 phenotypes (knockdown vs. control) and 3 replicates for each of them. All mapped and cuffdiff-ed. I want to get a plot between my replicates from same phenotypes with FPKM values on the x and y axis (in log10). Actually here is an example:
Can you suggest me a program for this purpose? I know you are going to say "R" but I am not very familiar with it.
Thanks!
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