Hi,
to keep the number of false-positive-SNP-calls and thus the number of follow-up experiments (e.g. sanger control sequencing) as low as possible, I was wondering which software performs best on this task.
Fungi, human (enriched) datasets.
What are the experiences?
I surely will try a few, including Illumina's CASAVA, but some hints are welcome ..
Thanks,
Sven
to keep the number of false-positive-SNP-calls and thus the number of follow-up experiments (e.g. sanger control sequencing) as low as possible, I was wondering which software performs best on this task.
Fungi, human (enriched) datasets.
What are the experiences?
I surely will try a few, including Illumina's CASAVA, but some hints are welcome ..
Thanks,
Sven
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