I've been tasked with analysis of a metagenome sample from an extreme environment. I'm a bit new to the meta- stuff, so I opted to initially run the MetAMOS pipeline, which has assembled and spit out taxonomic information.
While this is a good starting point, I want to dig deeper and look at the uniqueness of some enviro-specific things (like maybe sulfur metabolism pathways?), but I'm not sure which way to go or how to get there.
I've done a CDSearch and genefinding via prodigal off of the assembled contigs (I think I'm headed in the right direction here) but I'm not sure what to do with the output.
Any input/ideas?
While this is a good starting point, I want to dig deeper and look at the uniqueness of some enviro-specific things (like maybe sulfur metabolism pathways?), but I'm not sure which way to go or how to get there.
I've done a CDSearch and genefinding via prodigal off of the assembled contigs (I think I'm headed in the right direction here) but I'm not sure what to do with the output.
Any input/ideas?
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