Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • batch job manager?

    I suppose many have this problem: how do you efficiently utilize available CPUs, disks and memory while simultaneously running many (possibly large memory) jobs? Is there a shell based tool that can take a list of work to do and dispatch the jobs (or parts of the jobs) as resources become available? I'm sure many have just cobbled their own solution. But there must be a real, robust, open source, batch manager somewhere. It'd be great if you could specify things like number of CPUs to use, be "nice" when others are doing jobs but be a hog when nobody else is doing anything, tag jobs to only run one instance because it might use too much memory, split temp files among disks, etc. Unix/Linux would be fine but operating system independent would be okay.

    Any ideas?

  • #2
    you are looking for resource managers and batch schedulers
    Torque and Maui are good places to start your search

    Comment


    • #3
      Another option is Condor:

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Essential Discoveries and Tools in Epitranscriptomics
        by seqadmin




        The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
        04-22-2024, 07:01 AM
      • seqadmin
        Current Approaches to Protein Sequencing
        by seqadmin


        Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
        04-04-2024, 04:25 PM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Yesterday, 11:49 AM
      0 responses
      15 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-24-2024, 08:47 AM
      0 responses
      16 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-11-2024, 12:08 PM
      0 responses
      62 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-10-2024, 10:19 PM
      0 responses
      60 views
      0 likes
      Last Post seqadmin  
      Working...
      X