fastq file:
@I326_2_FC306FCAAXX:8:1:50:985
ATGTCCGAAGGGCAGTCTCAAGTGGTAAAATGGAT
+I326_2_FC306FCAAXX:8:1:50:985
hhhWhhhchhhhhahShh\PO]LgXZXPNLUTZNO
MAQ alignment output:
I326_2_FC306FCAAXX:8:1:50:985 1 1 + 0 0 99 99 99 0 0 1 0 35 ATGTCCGAAGGGCAGTCTCAAGTGGTAAAATGGAT ```W```````````S``\PO]L`XZXPNLUTZNO
what's the meaning of ```W```````````S``\PO]L`XZXPNLUTZNO ?
not the same as hhhWhhhchhhhhahShh\PO]LgXZXPNLUTZNO
@I326_2_FC306FCAAXX:8:1:50:985
ATGTCCGAAGGGCAGTCTCAAGTGGTAAAATGGAT
+I326_2_FC306FCAAXX:8:1:50:985
hhhWhhhchhhhhahShh\PO]LgXZXPNLUTZNO
MAQ alignment output:
I326_2_FC306FCAAXX:8:1:50:985 1 1 + 0 0 99 99 99 0 0 1 0 35 ATGTCCGAAGGGCAGTCTCAAGTGGTAAAATGGAT ```W```````````S``\PO]L`XZXPNLUTZNO
what's the meaning of ```W```````````S``\PO]L`XZXPNLUTZNO ?
not the same as hhhWhhhchhhhhahShh\PO]LgXZXPNLUTZNO
Comment