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Old 07-08-2017, 10:20 AM   #1
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Location: USA

Join Date: Jun 2016
Posts: 3
Default How to find overlap in small RNA reads?

Is there any script that I can use to find overlaps among small RNA reads (fastq file)?

I am using a python script developed by Institut de Biologie Paris Seine at

This extremely useful script gives me Z-scores for all overlaps but I want a different one that would give me option to separate out the reads of a specific overlap (i.e. 19nt, 10nt).

Thank you very much!!

Last edited by Juulluu21; 07-09-2017 at 08:43 AM.
Juulluu21 is offline   Reply With Quote

pirnas, python, rnai, small rna seq

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