SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Problems with Biolinux 8 crvalenz Bioinformatics 5 02-13-2017 03:14 AM
Newbler 2.7 on BioLinux 7.0 (Ubuntu 12.04.1 LTS) cement_head 454 Pyrosequencing 14 06-05-2015 05:28 AM
Galaxy to Cummerbund Data Import Issue mclo41 Bioinformatics 5 03-02-2015 10:23 AM
Error trying to install from shedtool into Galaxy on Biolinux 8 thondeboer Bioinformatics 3 01-08-2015 04:57 AM
Having problem with installation of Galaxy in BioLinux evaavra Bioinformatics 0 09-27-2013 02:10 AM

Reply
 
Thread Tools
Old 07-26-2017, 01:30 AM   #1
JH_Reading
Junior Member
 
Location: UK

Join Date: Jul 2017
Posts: 1
Default RPy issue in Galaxy on Biolinux 8

Hi,

I am using Galaxy in BioLinux8 and having a consistent issue with RPy e.g.

Traceback (most recent call last):
File "/usr/lib/galaxy-server/tools/plotting/histogram.py", line 5, in <module>
from rpy import *
File "/usr/lib/python2.7/dist-packages/rpy.py", line 134, in <module>
""" % RVERSION)
RuntimeError: No module named _rpy3030

RPy module can not be imported. Please check if your rpy
installation supports R 3.3.0. If you have multiple R versions
installed, you may need to set RHOME before importing rpy. For
example:

>>> from rpy_options import set_options
>>> set_options(RHOME='c:/progra~1/r/rw2011/')
>>> from rpy import *

As a biologist, could any offer a simple solution to this?

Many thanks,

John Hammond
University of Reading, UK
JH_Reading is offline   Reply With Quote
Reply

Tags
biolinux8, galaxy, python, rpy

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 07:54 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO