Dear readers,
When using library cummeRbund, I got errors:
----------------------------------------------------------
> readCufflinks('diff_out')
Error in sqliteSendQuery(con, statement, bind.data) :
error in statement: no such table: genes
----------------------------------------------------------
The same computational environment made it when I analyzed the other cuffdiff output "diff_out_1":
> readCufflinks('diff_out_1')
CuffSet instance with:
8 samples
39170 genes
94818 isoforms
88478 TSS
46842 CDS
1095696 promoters
2477384 splicing
646716 relCDS
I have tried a lot, however, I can not figure out what is the problem. All packages on my computer and files in 'diff_out' are totally fine. Could you please give me some suggestions? I appreciate your time and reply.
When using library cummeRbund, I got errors:
----------------------------------------------------------
> readCufflinks('diff_out')
Error in sqliteSendQuery(con, statement, bind.data) :
error in statement: no such table: genes
----------------------------------------------------------
The same computational environment made it when I analyzed the other cuffdiff output "diff_out_1":
> readCufflinks('diff_out_1')
CuffSet instance with:
8 samples
39170 genes
94818 isoforms
88478 TSS
46842 CDS
1095696 promoters
2477384 splicing
646716 relCDS
I have tried a lot, however, I can not figure out what is the problem. All packages on my computer and files in 'diff_out' are totally fine. Could you please give me some suggestions? I appreciate your time and reply.
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