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Thread Tools |
01-07-2010, 02:39 PM
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#1 |
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Junior Member
Location: USA Join Date: Jan 2010
Posts: 8
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Velvet Assemby Reference
Hi All,
Can velvet align to a reference genome and if so how? Also do people have any thoughts on a good hash length. I am trying to align a transcriptome to a reference genome. I have 20M 35bp reads from Solexa. Thanks, Paul |
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01-14-2010, 06:37 AM
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#2 |
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Senior Member
Location: Switzerland Join Date: Aug 2008
Posts: 124
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Velvet is an assembler not aligner. Look at alignment tools at http://seqanswers.com/forums/showthread.php?t=43 under "Align/Assemble to a reference".
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