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Old 05-24-2011, 09:21 AM   #1
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Default 1000 Genomes GVF Format

Does anyone know the link to download 1000 Genomes human SNPs in GVF format?

I can only find VCF format and am clueless on converting it to GVF.
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Old 06-16-2011, 06:48 AM   #2
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The 1000 Genomes project does not distrubute any data in GVF format

You can get the pilot snps on GRCh37 in GVF format from Ensembl

For how to convert between the 2 formats I would suggest writing something your self using the description here

as I don't think anyone else has written a converter yet
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Old 08-18-2011, 05:29 AM   #3
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Default GVF to VCF converter

I have written a GVF to VCF converter (only in that direction)

It is available on google code now.

if someone likes, they can make a VCF to GVF converter... I'm not yet planning to make one (unless the need arises)

Disclaimer: use at your own risk!! please report bugs/ideas
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Old 06-25-2015, 06:50 AM   #4
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Sorry for bumping this 4 years old thread. I tried to get the code for, but the link is broken. Is there another link to get the code?


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Old 07-19-2016, 01:50 AM   #5
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Here is a different script to do the same:
Homepage: Dan Bolser
MetaBase the database of biological databases.
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