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Old 11-08-2011, 12:53 PM   #1
vinay052003
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Location: Atlanta, US

Join Date: Jan 2010
Posts: 59
Default FASTX quality plot error

Hi all,
I am using FASTX tool kit to for the quality control. When I run fastq_quality_boxplot_graph.sh script on the quality stats file, I get following two strange errors:

line 0: undefined variable: inside

and

gnuplot> plot 'my_input_file' using 1:7:11:12:9 with candlesticks lt 1 lw 1 title 'Quartiles' whiskerbars, '' using 1:8:8:8:8 with candlesticks lt -1 lw 2 title 'Medians'
^
line 0: ';' expected



Any suggestions?

Thanks.
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Old 11-16-2011, 03:57 PM   #2
teriri
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Location: boston

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Default

Hi Vinay -- did you ever resolve this issue? I am encountering it as well.

Thanks

-T
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Old 11-18-2011, 08:26 AM   #3
vinay052003
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I figured my GNU plot libraries were missing. I installed them and it worked.
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