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Old 07-07-2010, 08:03 AM   #1
Location: Spain

Join Date: Jun 2010
Posts: 56
Default Software for determining Genes near peaks?

Hi all,

I am interested in getting the list of genes near to my peaks. I have tried different packages but they only give you the nearest gene to your peak. I would be interested in getting a software in which you could get alll the genes up to a distance determined by me.

Does anybody know whether this exits?

Thanks in advance
chariko is offline   Reply With Quote
Old 07-07-2010, 08:12 AM   #2
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Location: Stockholm, Sweden

Join Date: Feb 2008
Posts: 319

There are lots. For example, BEDTools (windowBED) and cisGenome. The online tool Galaxy also has this kind of functionality.
kopi-o is offline   Reply With Quote

chip-seq, gene, location, peak

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