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Old 05-11-2015, 08:54 PM   #1
Location: Canada

Join Date: May 2013
Posts: 25
Default DESeq2 and genomic ranges

Is it possible to create a bed file or extract the genomic coordinates (start, end and strand) from the list of DE genes generated by DESeq2?
nbahlis is offline   Reply With Quote
Old 05-11-2015, 11:57 PM   #2
Location: San Francisco South Bay Area

Join Date: Oct 2013
Posts: 20

You can first download a BED file from

and then write a script to extract the genes that you are looking at.
shunyip is offline   Reply With Quote

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