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Old 07-29-2010, 01:02 PM   #1
Location: San Mateo, CA

Join Date: Feb 2010
Posts: 17
Default IMAGE input files


We are using IMAGE to fill in gaps of our genome assembly but are not sure how to generate the required input files:

contigs.fa.original and

Our initial assembly is done with BWA. Does anyone have a script that can use a BAM file (the BWA output) to generate contigs.fa.original and read.placed.original?


Sarah Kingan
skingan is offline   Reply With Quote

bam, bwa, image

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