hi all,
I'm doing some analysis in 454 data. I have picked Operational Taxonomic Units (OTUs) based on sequence similarity within the reads, and picked a representative sequence from each OTU.Then assign the each representative sequence of OTU to a taxonomic identity using RDP classifier. my question is how to make a readable matrix of OTU abundance in each sample ?
I'm doing some analysis in 454 data. I have picked Operational Taxonomic Units (OTUs) based on sequence similarity within the reads, and picked a representative sequence from each OTU.Then assign the each representative sequence of OTU to a taxonomic identity using RDP classifier. my question is how to make a readable matrix of OTU abundance in each sample ?
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