Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Phaseolus vulgaris genome

    Hi guys,

    I need to find a list with all genes beans and respective functions . Anyone could suggest me any site to take this list?

    I have used the phytozome site, but but it provides a gene and its function at a time.

  • #2
    get this file : ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz

    example fetch from command line: wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz

    ungzip (decompress) this file.

    Your "French Bean" genes begin with taxonomy id "3885".

    Example to get extract your genes : grep "^3885" gene_info

    Look at the first line of "gene_info" for figuring out what the fields on a line are.

    Most of these genes are "hyopthetical proteins" and determing their possible functions is another dimenson of diffuculty.

    Comment


    • #3
      Thanks Richard,
      but I have a doubt about the file.
      This file contains Phaseolus vulgaris' gene ? Because the names of the genes I have are different .
      Last edited by luana; 08-16-2016, 10:50 AM.

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Current Approaches to Protein Sequencing
        by seqadmin


        Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
        04-04-2024, 04:25 PM
      • seqadmin
        Strategies for Sequencing Challenging Samples
        by seqadmin


        Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
        03-22-2024, 06:39 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, 04-11-2024, 12:08 PM
      0 responses
      18 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-10-2024, 10:19 PM
      0 responses
      22 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-10-2024, 09:21 AM
      0 responses
      17 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-04-2024, 09:00 AM
      0 responses
      49 views
      0 likes
      Last Post seqadmin  
      Working...
      X