I have digital gene expression data in bed-format.
One type of file would be bed-files where each entry corresponds to one sequenced tag.
Another type of file would be bed-files where each entry corresponds to a "cluster" of tags, and the score-field of the bed-file corresponds to the expression level of that cluster.
I want to display this data in the IGV browser from broad institute.
I can load the data, but I see the data only displayed in the form of regions on the genome. However, what I want to see is some kind of barchart so that I can clearly see where and *how many* of my tags align. I.e. I want to see expression levels in a quantitative way (bar chart, graph...).
How can I set the display options accordingly?
Or, should I not use bed-format in the first place, then which format would you recommend?
One type of file would be bed-files where each entry corresponds to one sequenced tag.
Another type of file would be bed-files where each entry corresponds to a "cluster" of tags, and the score-field of the bed-file corresponds to the expression level of that cluster.
I want to display this data in the IGV browser from broad institute.
I can load the data, but I see the data only displayed in the form of regions on the genome. However, what I want to see is some kind of barchart so that I can clearly see where and *how many* of my tags align. I.e. I want to see expression levels in a quantitative way (bar chart, graph...).
How can I set the display options accordingly?
Or, should I not use bed-format in the first place, then which format would you recommend?
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