Hi Jim,
IGV is a great tool! I use it all the time. I have a question about the “coverage”. I hope to view all the reads mapped to a region, according to IGV, the depth of the reads is about 1000. However, I am not sure whether IGV has displayed all the 1000 reads, since if I use the “expanded” view, the number of the gray bars (I assume each gray bar represents one read) doesn’t seem to be 1000. I tried the change the “Maximum read depth” under “Alignment” of the “Preferences”. However, the number of the gray bars doesn’t seem to increase. I probably missed something on the user’s manual. Thank you very much!
IGV is a great tool! I use it all the time. I have a question about the “coverage”. I hope to view all the reads mapped to a region, according to IGV, the depth of the reads is about 1000. However, I am not sure whether IGV has displayed all the 1000 reads, since if I use the “expanded” view, the number of the gray bars (I assume each gray bar represents one read) doesn’t seem to be 1000. I tried the change the “Maximum read depth” under “Alignment” of the “Preferences”. However, the number of the gray bars doesn’t seem to increase. I probably missed something on the user’s manual. Thank you very much!
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