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Old 06-03-2019, 03:40 PM   #1
pallascat
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Default Tool to find publications related to a specific gene

Hello, I am looking for a tool where I can submit a list of gene names and get back relevant publications for each gene. I remember hearing about such programs in passing, but can't seem to find one. I have tried using NCBI Batch Entrez with little luck. Thanks!!
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Old 06-05-2019, 07:50 PM   #2
middlemale
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may DAVID (https://david.ncifcrf.gov/) 'gene report' do the job?
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Old 06-06-2019, 03:27 AM   #3
GenoMax
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You can use Entrezdirect utilities to query Pubmed database.

Code:
$ esearch -db pubmed -query "BRCA2 [GENE]" | esummary -format docsum | xtract -pattern DocumentSummary -element Title,FullJournalName,ELocationID

Understanding Factors Associated with Uptake of BRCA1/2 Genetic Testing among Orthodox Jewish Women in the USA Using a Mixed-Methods Approach.  Public health genomics  doi: 10.1159/000499852
Novel Germline Mutations of BRCA1 and BRCA2 in Korean Familial Breast Cancer Patients.  Chonnam medical journal doi: 10.4068/cmj.2019.55.2.99
Clinical characteristics and outcomes in elderly women with BRCA1 and BRCA2 mutations.  Gynecologic oncology    pii: S0090-8258(19)31261-2. doi: 10.1016/j.ygyno.2019.05.017
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Old 06-06-2019, 11:03 AM   #4
pallascat
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these work great, thanks!!!
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