Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • #46
    Hi, any update regarding the cummerbund error? Thanks

    Comment


    • #47
      Hi All,
      Quick update. The patched version of cummeRbund (release 2.8.2) is now up at bioconductor and passes all builds and checks:

      http://www.bioconductor.org/checkRes...ST/cummeRbund/

      So you should be able to update to this version using the bioconductor installer:

      source('http://www.bioconductor.org/biocLite.R')
      biocLite('cummeRbund')
      I have verified that most of the problems discussed in this thread have been handled, at least as far as I can test. There may be other functionality that has been broken that I have not come across yet. If you are still having problems, and you are certain that it pertains to the RSQLite compatibility, please let me know directly by email and I will try to work with you to get it resolved quickly.

      Future development of cummeRbund will be done on Github:

      http://github.com/gofflab/cummeRbund

      So feel free to open an issue there or submit any pull requests you may have.

      Thanks again for bearing with me, and apologies for not catching this change sooner!

      Cheers,
      Loyal

      Comment


      • #48
        Thanks! I met the same problem and this solution works!

        Originally posted by RomaChicken View Post
        I think I may have solved problem. And you can try my steps。
        First, upgrade biocLite:
        >source("http://www.bioconductor.org/biocLite.R")
        >biocLite("BiocUpgrade")

        Then, install "cummeRbund"
        >biocLite("cummeRbund")

        Last, install or reinstall "RSQLite"
        >biocLite("RSQLite")

        I hope it works for you.

        Comment

        Latest Articles

        Collapse

        • seqadmin
          Strategies for Sequencing Challenging Samples
          by seqadmin


          Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
          03-22-2024, 06:39 AM
        • seqadmin
          Techniques and Challenges in Conservation Genomics
          by seqadmin



          The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

          Avian Conservation
          Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
          03-08-2024, 10:41 AM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by seqadmin, Yesterday, 06:37 PM
        0 responses
        12 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, Yesterday, 06:07 PM
        0 responses
        10 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 03-22-2024, 10:03 AM
        0 responses
        51 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 03-21-2024, 07:32 AM
        0 responses
        68 views
        0 likes
        Last Post seqadmin  
        Working...
        X