Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • 1/2 read and coverage?

    hi!
    sorry in advance for this stupid question, but i couldn´t figure it out anywhere:
    what is 1/2 (or 1/8) run? does this only mean that half of the standard-time is used for sequencing, so providing just half of the data? and how is this related to the coverage? is coverage only a function of genome-size and sequenced megabases? so can i calculate the estimated-coverage out of the genome-size and the estimated totally-sequenced-megabases (depending on the number of runs and the 454-system used)?
    i hope someone can help me, because this is confunsing me a bit!

    many thanks. Triticum.

  • #2
    or is 1/2 one half plate? but is it possible to seperate the plate physically to run e.g. 8x 1/8 runs on the same time?

    Comment


    • #3
      Originally posted by Triticum View Post
      or is 1/2 one half plate? but is it possible to seperate the plate physically to run e.g. 8x 1/8 runs on the same time?
      Yes, the plates are physically separated and then multiple samples run at the same time (e.g. your DNA and another lab's DNA). Therefore they all get the full flow cyles and full read lengths. Most centres will offer as small as 1/16 of a plate.

      Comment


      • #4
        We regularly use 1/16 of a plate for our experiments (metagenomics).

        Comment

        Latest Articles

        Collapse

        • seqadmin
          Essential Discoveries and Tools in Epitranscriptomics
          by seqadmin




          The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
          04-22-2024, 07:01 AM
        • seqadmin
          Current Approaches to Protein Sequencing
          by seqadmin


          Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
          04-04-2024, 04:25 PM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by seqadmin, Today, 08:47 AM
        0 responses
        11 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 04-11-2024, 12:08 PM
        0 responses
        60 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 04-10-2024, 10:19 PM
        0 responses
        59 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 04-10-2024, 09:21 AM
        0 responses
        54 views
        0 likes
        Last Post seqadmin  
        Working...
        X