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Old 04-24-2012, 02:18 AM   #1
tmy1018
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Default Publicly available strand-specific RNA-Seq data with corresponding RT-PCR data?

Hi,

I'm wondering if there publicly available strand-specific RNA-Seq data with corresponding RT-PCR data?

I found 2 papers that has the data I need: 1. http://www.plosone.org/article/info%...l.pone.00152711 2. http://genomebiology.com/2010/11/8/R87

But the problem is that the amount of data is too small. I'm wondering if there are larger data sets available?

Thanks!
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Old 04-30-2012, 03:28 PM   #2
dmacmillan
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I would be interested in finding some strand-specific RNA-Seq data that is publicly available as well!
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Old 05-01-2012, 01:50 PM   #3
jujubix
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modENCODE Drosophila (http://www.modencode.org/) has several strand-specific RNA-seq libraries, although I'm not sure they have corresponding RT-PCR data...

12 strand-specific embryonic total-RNA SOLiD libraries here, 19 strand-specific cell line poly-A+ Illumina libraries here, and the corresponding paper here
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