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Old 11-06-2015, 07:58 AM   #1
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Location: stockholm, sweden

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Default Homer makeTagDirectory error with hg19

I have installed hg19 for homer but when I try to make a tag directory:

makeTagDirectory my_tagDirectory -checkGC -genome hg19 -format bed myfile.bed

I get the following error messages:
Couldn't open a sequence file for "1" (home/user/glob/homer//data/genomes/hg19//genome.fa.masked)

...and so on for every chromosome.

I tried giving homer the genome in a separate fasta file, and then it works.

Any tips on what might be the problem?
micron is offline   Reply With Quote

hg19, homer

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