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04-11-2016, 06:11 AM
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#1 |
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Junior Member
Location: Nantes, France Join Date: Apr 2016
Posts: 2
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Annotate peaks based on Histon Mark
Hi everyone,
I've performed ChIP-seq analysis on TFs for a specific cell line for which I only have three histones marks (H3K4me1, H3K27ac and H3K4me3). I used HOMER to annotate differents peak from my datas but now I would like to use these histones marks to improve the annotation (for example if one peak is present as the same region than H3K27ac and H3K4me1 peaks, I would like to say that this region is an active enhancer). Does somebody have already done this kind of analysis? Thanks in advance, |
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04-11-2016, 06:23 AM
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#2 |
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Senior Member
Location: East Coast USA Join Date: Feb 2008
Posts: 7,088
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For reference, cross-posted: https://www.biostars.org/p/186058/
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| annotation, homer |
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