Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    error running BWA

    I am running BWA using hg10 on paired end (100XPE) but I am getting error message- Warning: no access to tty (Bad file descriptor).
    Thus no job control in this shell.
    [bwa_aln] 17bp reads: max_diff = 2
    [bwa_aln] 38bp reads: max_diff = 3

    [bwa_aln_core] 168861678 sequences have been processed.
    [bwa_sai2sam_pe_core] convert to sequence coordinate...
    SA-BWT inconsistency: seq_len is not the same. Abort!
    line 20: 22365 Aborted
    [samopen] SAM header is present: 84 sequences.
    [sam_read1] reference 'ID:bwa PN:bwa VN:0.5.9-r16

    27682

    ' is recognized as '*'.
    [main_samview] truncated file.

    What is wrong here and how can I fix it, It is happening with all the files.
    Thanks
    Last edited by honey; 06-01-2012, 09:05 PM.
    Tags: None
Previous template Next

Latest Articles

Collapse
  • seqadmin
    Essential Discoveries and Tools in Epitranscriptomics
    by seqadmin


    The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist on Modified Bases...
    Yesterday, 07:01 AM
  • seqadmin
    Current Approaches to Protein Sequencing
    by seqadmin


    Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
    04-04-2024, 04:25 PM
View All

ad_right_rmr

Collapse

News

Collapse
Topics Statistics Last Post
Cancer Metastasis: A Deep Dive into Cellular Plasticity by seqadmin
Started by seqadmin, 04-11-2024, 12:08 PM
0 responses
39 views
0 likes
 Last Post seqadmin
by seqadmin
04-11-2024, 12:08 PM  
Proteogenomic Profiles Offer New Clues in Prostate Cancer by seqadmin
Started by seqadmin, 04-10-2024, 10:19 PM
0 responses
41 views
0 likes
 Last Post seqadmin
by seqadmin
04-10-2024, 10:19 PM  
Novel Diagnostic Assay Enhances Ovarian Cancer Detection by seqadmin
Started by seqadmin, 04-10-2024, 09:21 AM
0 responses
35 views
0 likes
 Last Post seqadmin
by seqadmin
04-10-2024, 09:21 AM  
Evolutionary Dynamics of Centromeres: A Comparative Genomic Analysis by seqadmin
Started by seqadmin, 04-04-2024, 09:00 AM
0 responses
55 views
0 likes
 Last Post seqadmin
by seqadmin
04-04-2024, 09:00 AM  
View All
Working...
X