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Please excuse my ignorance if this information is available somewhere. Perhaps I do not know the correct terms to use for the search...
I have a RNA seq time series with 8 time points, 2 treatments (mock and treatment) and 2 replicates such that we have 32 total counts files.
I've been reading through different guides but I find either multiple replicates or time series, or treatments but not all.
How do I organize my files and the design for EdgeR analysis? If someone could point me to a tutorial that explains the syntax that would also help me arrive at the answer.
I think the issue I am having is I find multiple examples but do not understand the reasoning for differenes in syntax.
Thank you all in advance!
I have a RNA seq time series with 8 time points, 2 treatments (mock and treatment) and 2 replicates such that we have 32 total counts files.
I've been reading through different guides but I find either multiple replicates or time series, or treatments but not all.
How do I organize my files and the design for EdgeR analysis? If someone could point me to a tutorial that explains the syntax that would also help me arrive at the answer.
I think the issue I am having is I find multiple examples but do not understand the reasoning for differenes in syntax.
Thank you all in advance!
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