Hi All,
Using the new verison of TopHat, then the new version of Cufflinks here..
The program stalls/hangs at 13% complete- multiple times now..
The command:
Screen output:
Any idea why it is hanging? Sat like this (13%) for 12 hours today..
Using the new verison of TopHat, then the new version of Cufflinks here..
The program stalls/hangs at 13% complete- multiple times now..
The command:
Code:
/home/macmanes/cufflinks-0.9.1/cufflinks -N -r /media/hd_/tophat-1.1/social/tophat_out/tucomrna.fa --num-importance-samples 5000 --max-mle-iterations 20000 -p 15 /media/hd_/tophat-1.1/solitary/tophat_out/accepted_hits.bam
Code:
[20:13:29] Inspecting reads and determining fragment length distribution. > Processing Locus 253055:2-223 [*** ] 13%
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