Hello,
I've been looking around for a while for a visual sequence viewer to replace notepad++ without much luck. The key features I'm interested in are being able to load a fasta file (scaffold/chromosome size hopefully), and being able to either import and view blast alignments, or provide other files for a blast alignment, being able to view coordinates from the match and being able to provide coordinates and extract a sub-sequence from the large fasta file to work with.
Is there a simple program which fits this bill?
Thanks
I've been looking around for a while for a visual sequence viewer to replace notepad++ without much luck. The key features I'm interested in are being able to load a fasta file (scaffold/chromosome size hopefully), and being able to either import and view blast alignments, or provide other files for a blast alignment, being able to view coordinates from the match and being able to provide coordinates and extract a sub-sequence from the large fasta file to work with.
Is there a simple program which fits this bill?
Thanks
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