Does someone know how much memory eXpress usually consumes? (https://github.com/adarob/eXpress)
I am using eXpress together with kma (https://github.com/pachterlab/kma)
But I run out of memory after a few minutes when I a run:
express -o 2monthsCTX/WT/WT1/xprs_out annotation/mm10_and_introns.fa \
2monthsCTX/WT/WT1/mm10.bam
my mm10_and_introns.fa has 3.6 gb
and my mm10.bam file has 9.2 gb
I have 42GB allocated RAM on my virtual Linux machine.
Is it possible that this is not enough RAM for one sample, or is it more likely that something else is wrong?
Many thanks for any help.
I am using eXpress together with kma (https://github.com/pachterlab/kma)
But I run out of memory after a few minutes when I a run:
express -o 2monthsCTX/WT/WT1/xprs_out annotation/mm10_and_introns.fa \
2monthsCTX/WT/WT1/mm10.bam
my mm10_and_introns.fa has 3.6 gb
and my mm10.bam file has 9.2 gb
I have 42GB allocated RAM on my virtual Linux machine.
Is it possible that this is not enough RAM for one sample, or is it more likely that something else is wrong?
Many thanks for any help.
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