Top bioinformatics GitHub repos

fieldcady · 01-02-2019, 07:09 PM

I work on the Semantic Scholar academic search engine, and wanted to let people know about a blog post we just put up where we combed through 7 million biomed papers and found the most-mentioned GitHub repos. The top one was Sickle, and 14 out of the top 15 were bioinformatics (the 15th was Keras, a general deep learning library). Enjoy!

SES · 01-04-2019, 11:18 AM

Thanks for sharing! Interesting project.

fieldcady · 01-04-2019, 12:25 PM

Thanks SES! Also do you have any suggestions about the best ways to let people know about the blog? We're mostly just a bunch of computer scientists at Semantic Scholar so we don't know the field well - I literally found this forum by googling around. But if the post is worthwhile for bioinformatics specialists I would really love to spread it around a bit more. Thanks!!

GenoMax · 01-04-2019, 12:33 PM

You could also post this on Biostars.org using "News" category.

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01-02-2019, 07:09 PM	#1
fieldcady Junior Member Location: Seattle Join Date: Jan 2019 Posts: 2	Top bioinformatics GitHub repos I work on the Semantic Scholar academic search engine, and wanted to let people know about a blog post we just put up where we combed through 7 million biomed papers and found the most-mentioned GitHub repos. The top one was Sickle, and 14 out of the top 15 were bioinformatics (the 15th was Keras, a general deep learning library). Enjoy!

01-04-2019, 11:18 AM	#2
SES Senior Member Location: Vancouver, BC Join Date: Mar 2010 Posts: 275	Thanks for sharing! Interesting project.

01-04-2019, 12:25 PM	#3
fieldcady Junior Member Location: Seattle Join Date: Jan 2019 Posts: 2	Thanks SES! Also do you have any suggestions about the best ways to let people know about the blog? We're mostly just a bunch of computer scientists at Semantic Scholar so we don't know the field well - I literally found this forum by googling around. But if the post is worthwhile for bioinformatics specialists I would really love to spread it around a bit more. Thanks!!

01-04-2019, 12:33 PM	#4
GenoMax Senior Member Location: East Coast USA Join Date: Feb 2008 Posts: 7,015	You could also post this on Biostars.org using "News" category.