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  • Celera Assembler Installation Failure

    Hello,
    I'm just trying to test runCA, but it appears that the program can't find gatekeeper in its bin (though I've checked and it's there). Has anyone run into this problem before/have ideas what might be going on? I'm just an undergraduate/I don't have much experience with genome assembly so any advice/insight would be much appreciated! Error message is below. Thanks in advance.


    runCA failed.

    ----------------------------------------
    Stack trace:

    at /usr/bin/runCA line 1501
    main::caFailure('can\'t find \'gatekeeper\' program in /Linux-amd64/bin. Poss...', undef) called at /usr/bin/runCA line 1049
    main::setParameters() called at /usr/bin/runCA line 6282

    ----------------------------------------
    Failure message:

    can't find 'gatekeeper' program in /Linux-amd64/bin. Possibly incomplete installation

  • #2
    You may want to change into the bin directory, or try adding the directory to your path

    export PATH=/home/yourdirectory/wgs-8.1/Linux-amd64/bin:$PATH

    You can also add this to your .bashrc file

    Comment


    • #3
      Thank you, that worked!

      Comment

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