Hey guys,
Our lab does not have any sequencers but we have access to a sequencing core. They recently acquired a couple of MiSeqs and thus far they are not able to give out the index read information (the machine demultiplexes the runs). As we don't have the MiSeq I have no way of knowing how exactly it or more importantly the data processing works, and I have no idea if there is a work around. I know they plan to try to address this starting next week but I'm curious if anybody here has any experience with this? I want the indexing reads along with the sequencing reads, not just the sequencing reads in different files.
Our lab does not have any sequencers but we have access to a sequencing core. They recently acquired a couple of MiSeqs and thus far they are not able to give out the index read information (the machine demultiplexes the runs). As we don't have the MiSeq I have no way of knowing how exactly it or more importantly the data processing works, and I have no idea if there is a work around. I know they plan to try to address this starting next week but I'm curious if anybody here has any experience with this? I want the indexing reads along with the sequencing reads, not just the sequencing reads in different files.
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