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  • about bowtie's command --fuzzy

    Does anyone use option --fuzzy before?

    I didn't see the option in bowtie's manual,but when I runned bowtie.

    it occurs the result:

    Encountered a space parsing the quality string for read FQ7FOXL01EXY1V
    If this is a FASTQ file with integer (non-ASCII-encoded) qualities, please
    re-run Bowtie with the --integer-quals option. If this is a FASTQ file with
    alternate basecall information, please re-run Bowtie with the --fuzzy option.

    I have tested this option with --best,option(1)--best option(2)--best --fuzzy,
    The result of two options were the same.


    If anyone know about --fuzzy,please tell me!!! Thanks

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