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Old 01-23-2014, 04:41 AM   #1
msalm
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Location: London

Join Date: Apr 2012
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Default Soft-clipping in Stampy

Hi there!

Does anyone have any experience with producing/retaining the soft-clipping signature in CIGAR strings when using Stampy (v.1.0.21), using BWA alignment as input?

Cheers,

Max
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