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  • Newbler 2.5.3 (gsAssembler) on Ubuntu or Rocks cluster?

    I cannot presently access or obtain a new computer with better specs. We have a bunch of older machines (7 x 1 GB RAM plus 2 GB RAM for head node) in a cluster with a Linux distributed operating system (Rocks). Has anyone tried running gsAssembler on a cluster? Does anyone know if this software can run on a cluster?

    Is 2 GB RAM on a single machine running Linux Ubuntu capable of handling cDNA sequence data from multiple 454 Junior runs?
    (> 200,000 reads, ave length >400 bp).

    Thanks for any advice,

    Jen

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